Index A | C | F | G | I | M | N | O | P | R | S | T | W A add_subcommands() (in module ccu.cli.main) adjacent_linkers (ccu.adsorption.sitefinder.MOFSiteFinder property) adsorbate (ccu.adsorption.adsorbatecomplex.AdsorbateComplexFactory property) adsorbate_orientations() (ccu.adsorption.adsorbatecomplex.AdsorbateComplexFactory method) AdsorbateComplex (class in ccu.adsorption.adsorbatecomplex) AdsorbateComplexFactory (class in ccu.adsorption.adsorbatecomplex) AdsorbateOrientation (class in ccu.adsorption.adsorbateorientation) AdsorbateOrientationFactory (class in ccu.adsorption.adsorbateorientation) AdsorptionSite (class in ccu.adsorption.sitefinder) as_matrix() (ccu.structure.symmetry.Rotation method) C calculate_cumulative_displacement() (ccu.structure.comparator.Comparator static method) calculate_separation() (in module ccu.structure.geometry) ccu module ccu.adsorption module ccu.adsorption.adsorbatecomplex module ccu.adsorption.adsorbateorientation module ccu.adsorption.adsorbates module ccu.adsorption.cli module ccu.adsorption.sitefinder module ccu.cli module ccu.cli.main module ccu.structure module ccu.structure.axisfinder module ccu.structure.cli module ccu.structure.comparator module ccu.structure.fingerprint module ccu.structure.geometry module ccu.structure.resizecell module ccu.structure.symmetry module check_similarity() (ccu.structure.comparator.Comparator static method) check_symmetry() (ccu.structure.symmetry.RotationSymmetry method) (ccu.structure.symmetry.Symmetry method) Comparator (class in ccu.structure.comparator) cosort_fingerprints() (ccu.structure.comparator.Comparator static method) cosort_histograms() (ccu.structure.comparator.Comparator static method) create_alignments() (ccu.adsorption.sitefinder.MOFSite method) create_between_linker_site() (ccu.adsorption.sitefinder.MOFSiteFinder method) create_intermediate_alignments() (ccu.adsorption.sitefinder.MOFSite method) create_linker_sites() (ccu.adsorption.sitefinder.MOFSiteFinder method) create_metal_site() (ccu.adsorption.sitefinder.MOFSiteFinder method) create_orientations() (ccu.adsorption.adsorbateorientation.AdsorbateOrientationFactory method) F find_farthest_atoms() (in module ccu.structure.axisfinder) find_primary_axis() (in module ccu.structure.axisfinder) find_secondary_axis() (in module ccu.structure.axisfinder) find_tertiary_axis() (in module ccu.structure.axisfinder) Fingerprint (class in ccu.structure.fingerprint) from_structure() (ccu.structure.fingerprint.Fingerprint class method) G get_adsorbate() (in module ccu.adsorption.adsorbates) get_axes() (in module ccu.structure.axisfinder) I Inversion (class in ccu.structure.symmetry) M module ccu ccu.adsorption ccu.adsorption.adsorbatecomplex ccu.adsorption.adsorbateorientation ccu.adsorption.adsorbates ccu.adsorption.cli ccu.adsorption.sitefinder ccu.cli ccu.cli.main ccu.structure ccu.structure.axisfinder ccu.structure.cli ccu.structure.comparator ccu.structure.fingerprint ccu.structure.geometry ccu.structure.resizecell ccu.structure.symmetry MOFSite (class in ccu.adsorption.sitefinder) MOFSiteFinder (class in ccu.adsorption.sitefinder) N next_complex() (ccu.adsorption.adsorbatecomplex.AdsorbateComplexFactory method) O operation (ccu.structure.symmetry.RotationSymmetry property) (ccu.structure.symmetry.Symmetry property) orient_adsorbate() (ccu.adsorption.adsorbatecomplex.AdsorbateComplexFactory method) P place_adsorbate() (ccu.adsorption.adsorbatecomplex.AdsorbateComplexFactory method) R Rotation (class in ccu.structure.symmetry) RotationSymmetry (class in ccu.structure.symmetry) run() (in module ccu.adsorption.adsorbatecomplex) (in module ccu.structure.resizecell) S sbu_metal (ccu.adsorption.sitefinder.MOFSiteFinder property) SiteAlignment (class in ccu.adsorption.sitefinder) SiteFinder (class in ccu.adsorption.sitefinder) sites() (ccu.adsorption.sitefinder.MOFSiteFinder method) (ccu.adsorption.sitefinder.SiteFinder method) structure (ccu.adsorption.adsorbatecomplex.AdsorbateComplexFactory property) surface_norm (ccu.adsorption.sitefinder.MOFSiteFinder property) Symmetry (class in ccu.structure.symmetry) SymmetryOperation (class in ccu.structure.symmetry) T transform() (ccu.structure.symmetry.Rotation method) (ccu.structure.symmetry.SymmetryOperation method) W write() (ccu.adsorption.adsorbatecomplex.AdsorbateComplex method)